PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_04A93DD74.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Dof
Protein Properties Length: 161aa    MW: 17290.1 Da    PI: 8.8802
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_04A93DD74.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof383.6e-12138161225
                 zf-Dof   2 kekalkcprCdstntkfCyynnys 25 
                            +e  lkcprC+stntkfCy+nnys
  Traes_5DL_04A93DD74.1 138 PEPGLKCPRCESTNTKFCYFNNYS 161
                            56789******************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-16122161IPR003851Zinc finger, Dof-type
PfamPF027016.5E-9142161IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MVFSSVPLYH DPPNWNQNHS QQQQQQQQQL QQQQQLSHHG QMFASGGGGG GMEMHHHHQQ  60
QQHQQYQQQQ HHHQLRPPVP PSGALMAPRP DGMGSAVALS GAGGGGAGAG AGGGPTGGAV  120
VRPGSMTDKA RMAKIPQPEP GLKCPRCEST NTKFCYFNNY S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM0843491e-156AM084349.1 Hordeum vulgare subsp. vulgare dof1 gene for dof zinc finger protein 1, exons 1-2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981250.15e-36PREDICTED: dof zinc finger protein DOF2.4-like
TrEMBLW5FPX01e-113W5FPX0_WHEAT; Uncharacterized protein
STRINGGRMZM2G017470_P014e-33(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48932961
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02460.16e-18Dof family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]